Record Information
Version 1.0
Update Date 1/22/2018 11:54:54 AM
Metabolite IDPAMDB001409
Identification
Name: Sn-Glycerol-1-phosphate
Description:Sn-glycerol-1-phosphate is a glycerol phosphate. It is a key substrate in phospholipid synthesis and phosphatidylglycerol sbiosynthesis. The sn-glycerol-3-phosphate acyltransferase (plsB) of Pseudomonas aeruginosa is a key regulatory enzyme that catalyzes the first committed step in phospholipid biosynthesis. (PMID 9393688) Fosmidomycin is a hydrophilic molecule and in many bacteria its uptake is an active process involving a cAMP dependent glycerol-3-phosphate transporter (GlpT). (PMID 18489786)
Structure
Thumb
Synonyms:
  • .alpha.-glycerophosphate
  • .alpha.-glycerophosphorate
  • .alpha.-glycerophosphoric acid
  • 1,2,3-Propanetriol, 1-(dihydrogen phosphate)
  • 1,2,3-Propanetriol, 1-(dihydrogen phosphoric acid)
  • 1-Glycerophosphate
  • 1-Glycerophosphorate
  • 1-Glycerophosphoric acid
  • 2,3-Dihydroxypropyl dihydrogen phosphate
  • 2,3-Dihydroxypropyl dihydrogen phosphoric acid
  • 2,3-Hydroxy-1-propyl dihydrogen phosphate
  • 2,3-Hydroxy-1-propyl dihydrogen phosphoric acid
  • 3-Glycerophosphate
  • 3-Glycerophosphoric acid
  • 3-Phosphoglycerol
  • a-Glycerophosphate
  • a-Glycerophosphorate
  • a-Glycerophosphoric acid
  • a-Phosphoglycerol
  • alpha-Glycerophosphate
  • Alpha-Glycerophosphorate
  • Alpha-Glycerophosphoric acid
  • Alpha-Phosphoglycerol
  • BBR
  • D-Glycerol 3-phosphate
  • D-Glycerol 3-phosphoric acid
  • Glycerol .alpha.-phosphate
  • Glycerol .alpha.-phosphoric acid
  • Glycerol 1-(dihydrogen phosphate)
  • Glycerol 1-(dihydrogen phosphoric acid)
  • Glycerol 1-phosphate
  • Glycerol 1-phosphoric acid
  • Glycerol 3-phosphate
  • Glycerol 3-phosphoric acid
  • Glycerol a-phosphate
  • Glycerol a-phosphoric acid
  • Glycerol alpha-phosphate
  • Glycerol alpha-phosphoric acid
  • Glycerol dihydrogen phosphate
  • Glycerol dihydrogen phosphoric acid
  • Glycerol α-phosphate
  • Glycerol α-phosphoric acid
  • Glycerol, 1-(dihydrogen phosphate)
  • Glycerol, 1-(dihydrogen phosphate) (8CI)
  • Glycerol, 1-(dihydrogen phosphoric acid)
  • Glycerol, 1-(dihydrogen phosphoric acid) (8ci)
  • GLYCEROL-3-PHOSPHATE
  • GLYCEROL-3-phosphoric acid
  • Glycerophosphate
  • Glycerophosphate i
  • Glycerophosphorate
  • Glycerophosphorate I
  • Glycerophosphoric acid
  • Glycerophosphoric acid I
  • L-Glycerol 1-phosphate
  • L-Glycerol 1-phosphoric acid
  • Sn-Glycerol 1-phosphate
  • sn-Glycerol 1-phosphoric acid
  • sn-Glycerol-1-phosphoric acid
  • SN-glyceryl phosphate
  • sn-Glyceryl phosphoric acid
  • [(2S)-2,3-dihydroxypropyl] dihydrogen phosphate
  • [(2S)-2,3-Dihydroxypropyl] dihydrogen phosphoric acid
  • α-Glycerophosphate
  • α-Glycerophosphorate
  • α-Glycerophosphoric acid
  • α-Phosphoglycerol
Chemical Formula: C3H9O6P
Average Molecular Weight: 172.0737
Monoisotopic Molecular Weight: 172.013674532
InChI Key: AWUCVROLDVIAJX-VKHMYHEASA-N
InChI:InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m0/s1
CAS number: 5746-57-6
IUPAC Name:[(2S)-2,3-dihydroxypropoxy]phosphonic acid
Traditional IUPAC Name: glycerophosphate
SMILES:[H][C@](O)(CO)COP(O)(O)=O
Chemical Taxonomy
Taxonomy DescriptionThis compound belongs to the class of organic compounds known as glycerophosphates. These are compounds containing a glycerol linked to a phosphate group.
Kingdom Organic compounds
Super ClassLipids and lipid-like molecules
Class Glycerophospholipids
Sub ClassGlycerophosphates
Direct Parent Glycerophosphates
Alternative Parents
Substituents
  • Sn-glycerol-3-phosphate
  • Monoalkyl phosphate
  • Alkyl phosphate
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • Organic phosphate
  • Saccharide
  • Secondary alcohol
  • 1,2-diol
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Aliphatic acyclic compound
Molecular Framework Aliphatic acyclic compounds
External Descriptors
Physical Properties
State: Not Available
Charge:-2
Melting point: Not Available
Experimental Properties:
PropertyValueSource
Predicted Properties
PropertyValueSource
Water Solubility30.6 mg/mLALOGPS
logP-1.8ALOGPS
logP-2ChemAxon
logS-0.75ALOGPS
pKa (Strongest Acidic)1.51ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area107.22 Å2ChemAxon
Rotatable Bond Count4ChemAxon
Refractivity31.39 m3·mol-1ChemAxon
Polarizability13.45 Å3ChemAxon
Number of Rings0ChemAxon
Bioavailability1ChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Biological Properties
Cellular Locations: Cytoplasm
Reactions:
Pathways: Not Available
Spectra
Spectra:
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-00di-5900000000-64043ee94d742cc4c8a4View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0a6r-9400000000-a63f5ba86caa3b7c6ee9View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0a4i-9000000000-cf0fb6dae7ed4a7915ccView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-00fr-6900000000-da790cb57078431a7c1aView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-004i-9100000000-cd376066ff1f1f928911View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-004i-9000000000-a6ed4a0320c8229c8621View in MoNA
References
References:
  • Brown, A. C., Parish, T. (2008). "Dxr is essential in Mycobacterium tuberculosis and fosmidomycin resistance is due to a lack of uptake." BMC Microbiol 8:78. Pubmed: 18489786
  • Heath, R. J., Goldfine, H., Rock, C. O. (1997). "A gene (plsD) from Clostridium butyricum that functionally substitutes for the sn-glycerol-3-phosphate acyltransferase gene (plsB) of Escherichia coli." J Bacteriol 179:7257-7263. Pubmed: 9393688
  • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res 40:D109-D114. Pubmed: 22080510
  • Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590. Pubmed: 21097882
Synthesis Reference: Not Available
Material Safety Data Sheet (MSDS) Not Available
External Links:
ResourceLink
CHEBI ID16221
HMDB IDNot Available
Pubchem Compound ID754
Kegg IDC00623
ChemSpider ID388409
Wikipedia IDNot Available
BioCyc IDSN-GLYCEROL-1-PHOSPHATE
EcoCyc IDSN-GLYCEROL-1-PHOSPHATE
Ligand Expo1GP